Databaseへのリンク
Blast
- BLAST Basic Local Alignment and Search Tool
- blast Basic Local Alignment Search Tool
- BLAST Human Sequences.
- BLAST microbial genomes
- BLAST Mouse Sequences.
- BLAST Saccharomyces cerevisiae Sequences
- BLAST Salmonella enterica subsp. enterica serovar Typhimurium LT2
- BLAST with Escherichia coli K12 genome
- Bork Group's WU-BLAST2 Search Service at EMBL
- Ensembl mouse blast
- last genome-scale sequence comparison
- Protein BLAST search protein databases using a protein query
- WU-BLAST2 Basic Local Alignment Search Tool for Searching Protein Databases EBI
E. coli gene
- Bacteriome.org
- Colibri Web Server
- E. coli Genetic Stock Center
- E. coli Genome Project
- E. coli K-12 MG1655 genome (projectの本部？)
- E. coli K12 Sequencing Project
- E.coli Database Portal
- E.coli gemone Experimental Data
- E.coli K-12 ORF Database
- E.coli O157H7 Sakai genome project
- E.coli ORF Database
- E.coli RNA Database
- EciD
- EcoCyc Encyclopedia of Escherichia coli K-12 Genes and Metabolism
- EcoCyc Encyclopedia of Escherichia coli K12 Genes and Metabolism
- EcoGene Home Page
- Ecoli Strain 系統生物研究センター
- EcoliHub - a comprehensive K-12 information resource - Home
- EcoliHub - Home
- Escherichia coli K-12 complete genome
- Escherichia coli K12 superfamily assignments
- Escherichia coli Misc-RNAs
- Escherichia coli rRNA, stable RNA
- Essential Genes in E. coli
- Functional Genomic Analysis of E.coli in Japan
- GenoBase reference search
- GenoBase
- KEGG Encyclopedia
- KEGG SSDB Database
- NCBI E.coli K12 genome
- Operon
- OU E.coli Gene Expression Database
- PEC (Profiling of E.coli Chromosome)
- promec index
- RegulonDB 6.2
- Strain Query
- Summary of Escherichia coli dataset, version 9.0
- The E. coli Index (part of the WWW Virtual Library)
- WGR -Worldwide Genetic Resources-
- ナショナルバイオリソースプロジェクト(NBRP) 大腸菌
- 住商ファーマ インターナショナル株式会社
- 大腸菌 Releated Site
Enzyme
- Home - Integrated Enzyme Database (IntEnz)
Genomeブラウザ
- ASAP(ゲノムプロジェクトの共同anotationサイト)
- AssEST Main Menu
- DBTSS HOME
- E. coli K-12 MG1655 MG16551013938..1016105
- E.coli K12 Chromosome 1-4639675
- Ecocyc Genome Browser
- Ensembl Genome Browser
- Ensembl Human Genome Central
- GeneCards Homepage
- GeneDB
- Generic Model Organism Database Construction Set
- Genome Channel Organism Navigation
- GOLD Genomes OnLine Database Homepage
- HomoloGene Home
- InterPro Home
- KEGG Encyclopedia
- KEGG Organisms
- NCBI Genome biology
- NCBI Map Viewer
- NCBI Reference Sequence (RefSeq)
- SIB-EPD
- SUPERFAMILY database of structural and functional protein annotations for all completely sequenced organisms
- TIGR Gene Indices - The Institute for Genomic Research
- UCSC Archaeal Genome Browser
- UCSC Genome Browser Home
- Vista tools
- オミックブラウズ - 統合データウェルス
- ゲノムネット
- ヒトゲノム解析センター
- 理研HumanGenomeReconstructionProject
Human
- Entrez Genome view
- H-InvDB.
- HGNC Home Page
- Homo sapiens mitochondrion, complete genome
- Human Gene Protein database クローン配布
- NCBI Human Genome Resources
- 東北大human cell
Interactome
- Kinetic Data of Biomolecular Interactions
Mass
- ariadneRNA MS-MS Search-home
- i-mass.com guides mass spectrometry information resource resource
- Mongo Oligo Mass Calculator v2.06
- Mongo Oligo 鈴木研Ver
- MS-Fit
- Nucleotide mass calculator
microarray
- ArrayExpress Home
- FatiGO+
- Gene Expression Omnibus (GEO) Main page
- MIAME
- miRNA Probes
- Reading the NCBI's GEO microarray SOFT files in R-BioConductor
- 遺伝子発現バンク(GEO)目次
microRNA
- Ambion's Online Catalog miRNA Search
- ARGONAUTE microRNA Database
- microRNA.org predicted target and expression data
- Mipred-miRNA
- miRBaseSequences by species
- miRBaseSequences
- miRGator
- miRNAMap - genomic maps of studying genes regulation by metazoan microRNAs
- miRNAMap
- miRNAminer
- NBmiRTar Web Server
- smiRNAdb -- Tuschl lab seq
- TarBase (miRNA target supported by experiment)
- Tuschl Lab Rockefeller University
- Welcome to miRAS (miRNA Analysis System at Tsinghua University)
mito
- Compilation of mammalian mitochondrial tRNA genes
- Mitomap
- MitoProteome
- PLMItRNA
- Welcome to MitoAnalyzer
mouse
- BloodExpress - A Web Server to Browse Gene Expression in Mouse Haematopoiesis
- Knockout Mouse Project (KOMP) Home
- MGI 3.44 - Mouse Nomenclature Home Page
- Mouse (Mus musculus)
- Mouse Genome Resources
- Mouse Nomenclature Home Page
- Mouse Phenome Database
- NCBI mouse Genome view
non-coding RNA
- Arabidopsis Small RNA Project
- miRNA The miRNA Registry
- ncRNA database Noncode
- Non-coding RNA Data Bank
- Non-Coding Sequence Retrieval System
- Noncoding RNA database
- Rfam Home (JFRC, Ashburn, VA)
- Rfam ncRNA family
- Rfam Rfam Home Page
- SIPHT Web Interface bacterial ncRNA
- Small RNA database
- Small RNAs in Rice and Maize
- snoGPS Search Server
- Snoscan Search Server
- sRNAPredict3
- SRPDB SRP database
- Telomerase Database
- The tmRNA Website
- tmRNA Database
- Welcome to RNAdb
- Yeast snoRNA database main
piRNA
- piRNABank
Probe, Tm
- BatchPrimer3
- MELTING TEMPERATURE ASSESSMENT
- MPrime1.3 Efficient Calculation of Multiple Primers and Oligos
- mPrimer3 Input (version 0.3.0)
- Primer3Plus
- primerx Primer Design Based on DNA Sequence
Protein
- 3dSearch Secondary Structure Superposition
- Bacteriome.org
- CBS Prediction Servers
- COGs - Clusters of Orthologous Groups
- dialign-tx job submission
- DiANNA
- ebi Tools PPSearch - Protein motifs Search with PROSITE
- ENZYME search by enzyme class
- ExPASy - PROSITE
- Finding tRNAs and tmRNAs - ARAGORN 1.1
- http--david.abcc.ncifcrf.gov-conversion.jsp
- InterPro home
- InterPro Release notes
- Main page - MolProbity
- motif Searching Protein and Nucleic Acid Sequence Motifs
- NetPhorest タンパクリン酸化
- Nuclear Protein Database (NPD) Protein Domains
- nucocog The Nucleotide Sequences Containing COG Database (The Protein Chemistry Group University Witten-Herdecke)
- PAPIA PArallel Protein Information Analysis system
- PDBsum
- Pfam Pfam Home Page
- Pfam protein family database
- pfamAlyzer
- PIR-International Protein Sequence Database
- PredictProtein - Structure Prediction and Sequence Analysis
- PRINTS
- Protein Modification Site
- Scansite Menu
- Structural Classification of Proteins (SCOP)
- SUPERFAMILY database of structural and functional protein annotations for all completely sequenced organisms
- The RCSB Protein Data Bank
- Welcome to the BCM Search Launcher
- YEBIS for DNA Alignment
- 遺伝子解析ツール集：アミノ酸配列解析ツール
Psudogene
- PseudoFam - The Families of Pseudogenes
RNA editing
- RNA Editing Web Site
RNAi
- HuSiDa Human siRNA Database
- RNAi Database
RNA修飾,構造
- BINDIGO
- Bioinformatics Links Directory RNA Motifs
- bps Database of RNA Base-pair Structures
- CONTRAfold CONditional TRAining for RNA Secondary Structure Prediction
- CorreLogo 3D sequence logos of RNA and DNA alignments
- Dinucleotide property database
- Gutell Lab Comparative RNA Web Site
- Gutell Lab CRW Site Comparative RNA Web Site and Project
- GUUGle 2RNA exact match search
- http--ozone3.chem.wayne.edu8080-Modifieds-res-img-ModParamTitle..gif
- HyFol (Hybridization and Folding of DNA-RNA)
- HyFol (Hybridization and Folding of DNA-RNA2)
- LocalMove
- MC-Fold MC-Sym
- MERNA
- mfold 2.3
- mfold 3.2
- MFOLD
- Modomics - Database of RNA Modifications
- Multiplex SCARNA - align multiple RNA sequences
- NA and DNA Folding (mfold)
- NAST RNA 3D structure
- NDB Tools Base Pair Viewer w- BPView
- NDB - The Nucleic Acid Database
- Pfold server RNA fold
- Pfold server
- QuadFinder Online Server for Quadruplex Motif Search and Analysis
- RDfolder
- RNA Motif Database
- RNA SSF Lab - Erpin
- RNA SSTRAND
- RNA Structure Detector
- RNABase The RNA Structure Database (RNA fromPDB)
- RNAfold input form
- RNAfold
- RNAinverse その構造を取る配列を出力
- RNALogo
- RNALOSS
- RNAmine
- RNAMST- RNA motif search
- rnasifter - Welcome
- RNAsoft - home page
- RNAxs web server
- RNAz WebServer
- RScan
- SCOR RNA3D構造のindex
- Segal Lab RNA Motifs 2008 - Predict Motif
- Sfold
- Shapiro Group RNA二次構造
- The Rensselaer bioinformatics web server. RNA and DNA Folding Applications
- The RNA Modification Database
- The SARA server RNA立体構造アラインメント
- The UTHCT Database Resources
- Tools_RNA_Studio 構造ムービーなど
- Vienna RNA web servers
- vsfold4 RNA structure prediction server
- vsfold5 RNA pseudoknot prediction server
- Welcome to BayesFold!
- Welcome to Srna
rRNA ribosome
- 5S rRNA data bank browser
- Database Of Ribosomal Crosslinks
- Fox Lab Prokaryotic 16S rRNA Signature Database
- Ribosomal Database Project - Release 10
- Ribosomal Database Project II
- Ribosomal Mutation Database
- Ribosomal Protein Gene Database
- rRNDB home
- SIMO 16S rRNA Database
- The European ribosomal RNA database
- The rRNA database
- the SSU rRNA Modification Database
- UMASS Amherst Yeast snoRNA Database
- Welcome to the 5S ribosomal RNA home page.
- Welcome to the rrndb - the Ribosomal RNA Operon Copy Number Database
snoRNA
- snoRNA Database
- snoRNA-LBME-db, a comprehensive database of human H-ACA and C-D box RNAs
Translation
- database of translational recoding events
tRNA
- Bjorn Canback Bioinformatics - ARAGORN
- Compilation 2003
- Finding tRNAs and tmRNAs - ARAGORN 1.0
- Genomic tRNA Database Home
- Genomic tRNA Database
- Home tRNADB-CE
- http--modomics.genesilico.pl-
- PLMItRNA
- SPLITS -Spliced tRNA search-
- SPLITSdb - HomePage
- TFAM the tRNA identity classifier system
- tRNA Compilation 2000
- tRNA Database interface
- tRNAcc v1.0
- tRNAdb - Transfer RNA database
- tRNAfinder
- tRNAscan-SE Search Server
- tRNAscan-SE Search Server2
yeast
- -Yeast-
- CandidaDB Web Server
- CCSB Interactome Database
- Comprehensive Yeast Genome Database
- Entrez Genome view
- Entrez yeast Genome view
- Genolevures 酵母とか比較ゲノム
- MCKeogh - S.cerevisiae resources?
- MIPS - Saccharomyces cerevisiae - The Yeast Genome
- Pombe 全ORF GFP fusion発現株
- S. pombe Postgenome Database 全タンパクLocalizationなど
- Saccharomyces Genome Database
- UMASS Amherst Yeast snoRNA Database
- YEAST MOLECULAR BIOLOGY
- Yeast small nucleolar RNAs required for the pre-rRNA processing
- Yeast snoRNA database mastertable
- Yeasts
- 色んな条件で培養タイリングアレイyeast
エピジェネティクス
- Histone maps and references
- Human Epigenome Consortium
リピート配列
- Browse RU - GIRI
- Repbase - GIRI
微生物系統
- National BioResource Project (NBRP) Bacillus subtilis
- 培養生物世界データセンター
- 微生物データベースシステム
- 細胞株・微生物株・遺伝子バンク(ATCC) 事業分野 住商ファーマインターナショナル株式会社
比較ゲノム
- http--gclust.c.u-tokyo.ac.jp-
- mbgd Microbial Genome Database for Comparative Analysis
- OrthoMCL Database Home
- PEC (Profiling of E.coli Chromosome)
- Phylogenetic patterns search
- PhyloPat Phylogenetic Patterns
- Protein Clusters Home
- SearchPage Main NMPDR
- Signature Genes NMPDR +-できる
- The Protein Chemistry Group ・ EPPS online description
- The Protein Chemistry Group ? PCOGR online
- The Protein Chemistry Group ? PKOGR online
発現データ
- ExpressDB RNA Expression Database
- Public microarray database
- Stanford MicroArray Database
- Yale Microarray Database (YMD)
経産省データベース
- Hyperlink management system
- MEDALS ツール便覧 RNA
- MEDALS データベース便覧 RNA
- pubmedscan
- AARS DataBase
- All-in-One Seq Analyzer
- allie 略語／展開形検索
- AluPlus
- Animal Genome Size Database Home
- AssEST Main Menu
- Bacterial Nomenclature Up-to-date
- BioInfo Bank
- Bioinformatics & Drug Design Group [BIDD]
- Biological Journals and Abbreviations Title Page
- CHIRAL - CD-UV Database Start Search
- Codon Usage Database
- Comparative RNA Web Site
- Compilation 2003
- Database of Interacting Proteins
- Database of Transcriptional Start Sites
- DBGET Integrated Database Retrieval System
- DBGET search - TRANSFAC
- DB統合への基盤づくり（H18) ? DB統合への基盤づくり（H18)
- DDBJ homepage
- DEG Database of Essential Genes
- Dinucleotide property database
- DOE Joint Genome Institute
- Entrez-PubMed
- ExPASy - PROSITE
- FAMS 類似タンパクからモデリング
- Finding tRNAs and tmRNAs - ARAGORN 1.1
- Gene Regulation
- GeneHub-GEPIS Home
- GeneMark (TM) - Gene prediction software programs
- Genome Office System
- GenomeSURF
- Genomic tRNA Database Home
- HighWire Press
- http--www.seqtools.dk-
- IMB Jena Biocomputing Group The RNA World Website
- IMB Jena Image Library of Biological Macromolecules
- Jabion-日本語バイオポータルサイト-
- JSTゲノム解析ツール
- Kazusa DNA Research Institute(J)
- MBGD Microbial Genome Database for Comparaitve Analysis
- MEDALS 経済産業省ライフサイエンス統合データベースポータルサイト
- MEROPS - the Peptidase Database
- MVIEW
- NCBI HomePage
- NDB Tools Base Pair Viewer w- BPView
- NDB - The Nucleic Acid Database
- NextBio
- Nuclear Protein Database (NPD) Protein Domains
- ODOOS 有機合成データベース
- Pathology Informatics, Inc., Home Page
- PDBj Japanese Home
- Protein Ligand Database v1.3 - Homepage
- PSORT protein localization
- QGRS Mapper Home
- READ Riken Expression Array Database
- Recoding database
- RegulonDB 5.5
- Repbase - GIRI
- RepeatMasker Home Page
- RNAi Database
- RNAmotifプログラムCasegroup
- Science of Synthesis Version 3.5
- SLASH
- SNP database network in Japan HomePage
- Springer LINK Landolt-Bornstein
- SStructView Home Page
- Structure Teaching Tool
- The Molecular Biology Database Collection 2002 update
- The PubChem Project
- The RNA Modification Database, University of Utah
- The Sanger Institute Software
- The tmRNA Website
- TIGR Microbial Database
- tmRNA Database
- TransTerm terminator予測
- tRNAdb - Transfer RNA database
- UniGene
- upgene a Web-based DNA Codon Optimization Algorithm
- uRNADB
- USC-A Chemistry UV-Vis Database
- VectorDB - Molecular Biology Vector Sequence Database
- Welcome to Dr.Santalucia's home page...
- Welcome to UniProt - UniProt [the Universal Protein Resource]
- WINGpro ライフサイエンス分野のデータベース
- データベース一覧(構築型分類 簡略版) - WINGpro
- ライフサイエンス統合データベースセンター
- 微生物データベースシステム
- 高度好熱菌丸ごと一匹プロジェクト